Corrigendum to “The effect of high concentrations of glycerol on the growth, metabolism and adaptation capacity of Clostridium butyricum DSP1”[Electron J Biotechnol 18/2 (2015) 128–133]

نویسنده

  • Daria Szymanowska-Powałowska
چکیده

The authors regret an oversight on their part resulting in the omission of some important information from the work. They failed to state where the proteomic analysis whose results they included in the paper has been performed. They also omitted several facts regarding the methodology of the analysis. As the authors highly regard the analytical service provided by the laboratory to which they missed to give credit in the papers, they wish to rectify the situation by including the below to the Acknowledgments section: The proteomic analysis was performed in cooperation with the Laboratory of Mass Spectrometry, Institute of Biochemistry and Biophysics, Polish Academy of Sciences. Moreover, the authors would also like to introduce few additions in the Methods section, the Protein analyses subsection, as seen below: Proteinswere reduced (10mMDTT, 30min, 56°C) and alkylatedwith iodoacetamide in darkness (45 min, 20°C) and digested overnight with 10 ng/μL trypsin. The resulting peptide mixtures were applied to the RP-18 pre-column of a UPLC system (Waters) using water containing 0.1% FA as a mobile phase and then transferred to a nano-HPLC RP-18 column (internal diameter 75 μm, Waters) using ACN gradient (0–35% ACN in 160 min) in the presence of 0.1% FA at a flow rate of 250 μL/ min. The column out-let was coupled directly to the ion source of an Orbitrap Velos mass spectrometer (Thermo). Each sample was measured in duplicate — once for protein sequencing (data-dependent MS to MS/MS switch) and once for quantitative information (MS only, sequencing disabled). The acquired MS/MS data were pre-processed with Mascot Distiller software (v. 2.3, MatrixScience) and a search was performed with the Mascot Search Engine MatrixScience, Mascot Server 2.4) against the set of Clostridium protein sequences derived from Uniprot, merged with its randomized version (16,294 sequences; 5,095,802 residues). The proteins that exactly matched the same set of peptides were combined into a single cluster. The mass calibration and

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تاریخ انتشار 2015